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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40042665_40046612_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40042665 - 40046612
Intron Length:
3948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTACCT
Flanking Amino Acid:
AAEQWLQWDKNPKTSAIVKQ
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.6
0.85
0.7
81.8
29.1
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
68.3
0.65
1.6
83.79
37.4

Associated Gene:

Gene:
PGM2
Ensembl Gene ID:
ENSAPLG00000008271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008666
40041691 - 40059771
18081