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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40047710_40048030_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40047710 - 40048030
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
TTCTTGTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTGTTAATA
Flanking Amino Acid:
AHLSSGGSSKRFARLAANTF
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.9
34.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.1
0.59
0.9
73.2
36
Minor 5ss
45.1
-0.5
3.1
67.5
43.4
Minor BPS
61.5
0.36
2
74.1
38.6

Associated Gene:

Gene:
PGM2
Ensembl Gene ID:
ENSAPLG00000008271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008666
40041691 - 40059771
18081