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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40052238_40053008_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40052238 - 40053008
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TCACTGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTGCTTATCA
Flanking Amino Acid:
PNPEEGKGVLTLSFALAEKD
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.6
0.62
0.9
68.7
41.8
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
61.3
0.35
2
76.09
41.2

Associated Gene:

Gene:
PGM2
Ensembl Gene ID:
ENSAPLG00000008271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008666
40041691 - 40059771
18081