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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40053107_40054463_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40053107 - 40054463
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
DRLAVAEKQESGEWKVFSGN
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
PGM2
Ensembl Gene ID:
ENSAPLG00000008271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008666
40041691 - 40059771
18081