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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40055881_40058431_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40055881 - 40058431
Intron Length:
2551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
CGTGTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACTTTTTCAATT
Flanking Amino Acid:
LSQQLKAVYDEYGLHITKAS
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
68.6
39.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.8
0.56
0.9
68
37.7
Minor 5ss
39.6
-1.2
2.9
45.7
43.5
Minor BPS
60.7
0.41
1.5
73.56
38.2

Associated Gene:

Gene:
PGM2
Ensembl Gene ID:
ENSAPLG00000008271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008666
40041691 - 40059771
18081