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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4005672_4013231_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4005672 - 4013231
Intron Length:
7560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCAAACCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTCAAACC
Flanking Amino Acid:
VDDPEAQNIHDIDDVRKHKP
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
87.5
28.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.1
0.47
0.9
63.1
38.1
Minor 5ss
39.8
-1.1
2.8
52.2
44.4
Minor BPS
54.8
0.13
2
74.1
37

Associated Gene:

Gene:
PPA2
Ensembl Gene ID:
ENSAPLG00000010174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010617
3996143 - 4031941
35799