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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40058622_40059297_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40058622 - 40059297
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTACTATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTCTTCTTACTA
Flanking Amino Acid:
YDSSQPDQKAILPTSKSSQM
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
78
0.63
0.9
70.5
40
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
65.9
0.5
1.6
74.1
38.6

Associated Gene:

Gene:
PGM2
Ensembl Gene ID:
ENSAPLG00000008271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008666
40041691 - 40059771
18081