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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40059432_40059668_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40059432 - 40059668
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTCC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTTTCTTTTTTT
Flanking Amino Acid:
YSELCAPPGNSDVEQLKKEL
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
62
37.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
44.2
-0.6
3
60
44.7
Minor BPS
43.4
-0.4
3.6
74.98
42.6

Associated Gene:

Gene:
PGM2
Ensembl Gene ID:
ENSAPLG00000008271
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008666
40041691 - 40059771
18081