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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40075790_40122740_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40075790 - 40122740
Intron Length:
46951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
YVFKADDQTKVPEIISSIRQ
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.7
0.6
0.7
68.9
31.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
TBC1D1
Ensembl Gene ID:
ENSAPLG00000007546
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007878
40075275 - 40182569
107295
ENSAPLT00000044662
40075275 - 40184411
109137