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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_401228_402135_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
401228 - 402135
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAT
Flanking Amino Acid:
EFENLVESDEGESPGSSHRP
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.4
0.53
1
66.5
43.1
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
72.6
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
AP1AR
Ensembl Gene ID:
ENSAPLG00000013936
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014532
395267 - 410869
15603