Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40126799_40129891_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40126799 - 40129891

Intron Length:

3093

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATTG

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTATGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

GACTGCTTCATT

Flanking Amino Acid:

SFKEISFCSQGIRHVDHFGF

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.8

0.99

0.8

81.6

33.2

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

0.47

39.6

Minor 5ss

41.6

-0.9

3.1

55.7

48.5

Minor BPS

48.1

-0

2.2

65.35

45.5

Associated Gene:

Gene:

TBC1D1

Ensembl Gene ID:

ENSAPLG00000007546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044662

40075275 - 40184411

109137

ENSAPLT00000007878

40075275 - 40182569

107295