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Intron Name: Anas_platyrhynchos_platyrhynchos_4_40139142_40140839_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40139142 - 40140839

Intron Length:

1698

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTCTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGTAAA

U12 Branch Point Sequence:

GTATCAGTAACC

Flanking Amino Acid:

VSSTLSSTNKEPPLCEKERD

Intron Amino Acid Position:

567

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

82.1

24.6

Major BPS

60.1

0.25

1.3

61.7

43.1

Major PPT

71.8

0.49

66.3

40.7

Minor 5ss

31.3

-2.1

2.7

33.5

35.5

Minor BPS

0.04

2.3

69.6

41.2

Associated Gene:

Gene:

TBC1D1

Ensembl Gene ID:

ENSAPLG00000007546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007878

40075275 - 40182569

107295

ENSAPLT00000044662

40075275 - 40184411

109137