About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40141130_40142845_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
40141130 - 40142845
Intron Length:
1716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GCGAATCTAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTATGAA
U12 Branch Point Sequence:
CGAATCTAAAAG
Flanking Amino Acid:
SVSTETPHMRNSSGQLARSP
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
57.7
0.19
1.3
51.7
43.9
Major PPT
48.7
-0
1.1
45.3
40.2
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
43.9
-0.6
1.8
42.52
42.1

Associated Gene:

Gene:
TBC1D1
Ensembl Gene ID:
ENSAPLG00000007546
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044662
40075275 - 40184411
109137