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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40141130_40146578_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40141130 - 40146578
Intron Length:
5449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCGATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGTTCTGCGATT
Flanking Amino Acid:
SVSTETPHMRNDYESQRSQQ
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
70.2
0.45
0.9
66.5
39.4
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
47.3
-0.1
2.2
71.52
40.1

Associated Gene:

Gene:
TBC1D1
Ensembl Gene ID:
ENSAPLG00000007546
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007878
40075275 - 40182569
107295