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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40142975_40145257_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40142975 - 40145257
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATAG
5'SS Class:
strong_major
3'SS Sequence:
ACTGCACTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAACT
Flanking Amino Acid:
GEQSGHFAQKSISYRTALRK
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
73.8
33
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
67.6
0.4
0.9
62.7
38
Minor 5ss
31.8
-2.1
3
37.5
47.2
Minor BPS
72.1
0.77
1.6
87.1
39

Associated Gene:

Gene:
TBC1D1
Ensembl Gene ID:
ENSAPLG00000007546
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044662
40075275 - 40184411
109137