Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4017140_4019479_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4017140 - 4019479

Intron Length:

2340

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATAAG

5'SS Class:

strong_major

3'SS Sequence:

ACGATCTGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAC

U12 Branch Point Sequence:

CTGTCTTTCACG

Flanking Amino Acid:

VPRWTNAKMEIATEEPLNPI

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.3

34.3

Major BPS

77.7

0.69

30.2

Major PPT

61.6

0.26

58.6

42.4

Minor 5ss

34.4

-1.8

2.8

41.5

45.1

Minor BPS

57.7

0.1

1.9

62.35

46.1

Associated Gene:

Gene:

PPA2

Ensembl Gene ID:

ENSAPLG00000010174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010617

3996143 - 4031941

35799