Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40177808_40180087_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40177808 - 40180087

Intron Length:

2280

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAAAT

5'SS Class:

strong_major

3'SS Sequence:

CTATATACAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTCTATATAC

Flanking Amino Acid:

LVQMEKTISQVFEMDIAKQL

Intron Amino Acid Position:

1071

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

82.4

29.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

65.3

0.35

59.6

Minor 5ss

41.2

-1

2.9

57.1

47.2

Minor BPS

0.07

1.9

72.59

38.2

Associated Gene:

Gene:

TBC1D1

Ensembl Gene ID:

ENSAPLG00000007546

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007878

40075275 - 40182569

107295

ENSAPLT00000044662

40075275 - 40184411

109137