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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4019534_4027942_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4019534 - 4027942
Intron Length:
8409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGCTA
5'SS Class:
major
3'SS Sequence:
GTTTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATTTTCAGT
Flanking Amino Acid:
AKRSKTTASEVLFNMVVEVP
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
63.1
42.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.3
0.66
0.9
77.4
36.9
Minor 5ss
32.6
-2
3.7
47.1
48.3
Minor BPS
49.7
0.06
2
75.45
41.9

Associated Gene:

Gene:
PPA2
Ensembl Gene ID:
ENSAPLG00000010174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010617
3996143 - 4031941
35799