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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_402162_402971_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
402162 - 402971
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCATGCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTCTCTCATG
Flanking Amino Acid:
DEGESPGSSHRPLTDEEIAD
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
71.5
0.49
0.9
69.4
36.6
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
51
-0.1
2.1
67.5
40.9

Associated Gene:

Gene:
AP1AR
Ensembl Gene ID:
ENSAPLG00000013936
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014532
395267 - 410869
15603