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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40261427_40271331_R

Intron Information:

Intron Rank:
146803
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
40261427 - 40271331
Intron Length:
9905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCTCT
5'SS Class:
weak_major
3'SS Sequence:
TCTTCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATGGCCAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
65.7
40.8
Major BPS
73.9
0.59
1
81
30.2
Major PPT
85.7
0.8
0.7
84.2
23.7
Minor 5ss
49.4
-0
2.8
75.9
39.2
Minor BPS
45.3
-0.2
2.1
64.45
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026307
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035586
40260365 - 40271628
11264
ENSAPLT00000029058
40251366 - 40271456
20091