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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4027988_4029659_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4027988 - 4029659
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
ACTTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TGTTCTCTAATG
Flanking Amino Acid:
DIPLFAAAKEDKEIPAKRSK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
80.6
0.69
0.8
73.6
30.8
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
62.2
0.24
1.7
68.74
39

Associated Gene:

Gene:
PPA2
Ensembl Gene ID:
ENSAPLG00000010174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010617
3996143 - 4031941
35799