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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4029725_4031406_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4029725 - 4031406
Intron Length:
1682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AGATTTGTAATG
Flanking Amino Acid:
PNSPDYRLYFKNGDGKYISP
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.7
38.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
37.9
-1.4
2.7
47.5
36
Minor BPS
46.7
-0.3
2
50.38
38.3

Associated Gene:

Gene:
PPA2
Ensembl Gene ID:
ENSAPLG00000010174
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010617
3996143 - 4031941
35799