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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40346010_40352180_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40346010 - 40352180
Intron Length:
6171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
KQEAMDPISVSYPSNYMDQM
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
75
0.56
0.9
71.5
33.1
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
KLF3
Ensembl Gene ID:
ENSAPLG00000007495
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007779
40338966 - 40359340
20375