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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40416528_40417210_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40416528 - 40417210
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
TTATTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTCATTATTT
Flanking Amino Acid:
SAITNAVQNTGKSVLSGGLD
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
68.1
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.8
0.78
0.9
80.8
35.7
Minor 5ss
32.6
-2
3
46.8
42.6
Minor BPS
62.4
0.47
1.9
82.13
39.2

Associated Gene:

Gene:
FAM114A1
Ensembl Gene ID:
ENSAPLG00000007063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007355
40404318 - 40435674
31357