Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40417346_40419910_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40417346 - 40419910

Intron Length:

2565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGATTT

5'SS Class:

major

3'SS Sequence:

TATATTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAA

U12 Branch Point Sequence:

CCACCAATAAAA

Flanking Amino Acid:

LMERTVSLSQLLREAKEKEK

Intron Amino Acid Position:

280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.2

73.6

37.9

Major BPS

56.5

0.16

0.9

63.3

29.1

Major PPT

86.2

0.81

0.8

36.1

Minor 5ss

38.8

-1.3

3.4

56.5

47.8

Minor BPS

43.1

-0.5

1.9

49.53

40.4

Associated Gene:

Gene:

FAM114A1

Ensembl Gene ID:

ENSAPLG00000007063

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007355

40404318 - 40435674

31357