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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40420064_40422356_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40420064 - 40422356
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CCTTCTTTTACA
Flanking Amino Acid:
EILSNESETQIQSYLETLDG
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
88.1
0.86
0.7
82.8
25.8
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
64.7
0.46
1.6
70.62
41.9

Associated Gene:

Gene:
FAM114A1
Ensembl Gene ID:
ENSAPLG00000007063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007355
40404318 - 40435674
31357