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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40422481_40427088_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40422481 - 40427088
Intron Length:
4608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCAGA
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AGCACCCTAACA
Flanking Amino Acid:
SDDEVVQAQKADMGEEFVSM
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.8
41.1
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
38.8
-1.3
2.8
49.6
46.2
Minor BPS
55.8
0.18
1.8
64.52
41.2

Associated Gene:

Gene:
FAM114A1
Ensembl Gene ID:
ENSAPLG00000007063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007355
40404318 - 40435674
31357