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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40427175_40428273_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40427175 - 40428273
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGAACTGTACT
Flanking Amino Acid:
VAATPDKLNKARKKAHEWLD
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
74.6
37.4
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
79.1
0.66
1
76.3
37.7
Minor 5ss
30.3
-2.3
2.9
36.8
40.3
Minor BPS
47.9
-0
2
71.01
45.1

Associated Gene:

Gene:
FAM114A1
Ensembl Gene ID:
ENSAPLG00000007063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007355
40404318 - 40435674
31357