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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40429856_40431147_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40429856 - 40431147
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAACC
Flanking Amino Acid:
TAQDQAKVLTNVTSAMCNEV
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
84.1
26.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.2
0.61
1
72.3
41.6
Minor 5ss
34.9
-1.7
3.4
49.4
41.3
Minor BPS
70.5
0.62
1.6
81.25
33.5

Associated Gene:

Gene:
FAM114A1
Ensembl Gene ID:
ENSAPLG00000007063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007355
40404318 - 40435674
31357