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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40431221_40434019_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40431221 - 40434019
Intron Length:
2799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTGGTTTACA
Flanking Amino Acid:
KFSDSLTAAGSSMKAEVLNP
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82
0.72
0.9
75.5
38.4
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
46.1
-0.3
2.6
66.88
45.5

Associated Gene:

Gene:
FAM114A1
Ensembl Gene ID:
ENSAPLG00000007063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007355
40404318 - 40435674
31357