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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40434074_40435572_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40434074 - 40435572
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TACTGATAAACC
Flanking Amino Acid:
NPLINSVLLEGCNSTTYIQD
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
68.3
0.41
0.8
67.4
27.7
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
46
-0.3
2.3
60.38
44.6

Associated Gene:

Gene:
FAM114A1
Ensembl Gene ID:
ENSAPLG00000007063
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007355
40404318 - 40435674
31357