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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40445200_40451060_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40445200 - 40451060
Intron Length:
5861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AATAGAAGAATT
Flanking Amino Acid:
HGHLSASAVEV*
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
89.1
0.88
0.6
84.4
23.4
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
38.4
-0.8
2.1
56.02
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007444
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007720
40445144 - 40468415
23272