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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40451166_40457301_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40451166 - 40457301
Intron Length:
6136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AATATTTTACCT
Flanking Amino Acid:
ISPTKIHLFPVKTNKQQVPL
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
75.6
0.58
0.8
68.9
36.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
55.9
0.26
1.6
71.65
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007444
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007720
40445144 - 40468415
23272