About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40457407_40460529_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40457407 - 40460529
Intron Length:
3123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTGTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTGTTTAAAA
Flanking Amino Acid:
YKIVYENGQNYCKHRGAAAV
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
70.8
0.47
1.1
67.6
41.7
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
66.9
0.53
1.8
80.33
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007444
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007720
40445144 - 40468415
23272