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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40460638_40461780_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40460638 - 40461780
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTTATTTAATC
Flanking Amino Acid:
ISLQLESYVEYPMCMAKIIW
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.1
0.63
1
76.3
37.8
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
68.6
0.56
1.5
74.77
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007444
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007720
40445144 - 40468415
23272