Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40496884_40504471_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40496884 - 40504471

Intron Length:

7588

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

ATGATGTGCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCATGAT

U12 Branch Point Sequence:

TTCTCCCGCATG

Flanking Amino Acid:

VAGDRRIPAHRLVLSSVSDY

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.7

1.1

0.7

87.9

29.3

Major BPS

54.3

0.11

1.4

47.7

45.7

Major PPT

61.5

0.26

1.1

46.7

Minor 5ss

43.8

-0.7

2.8

57.8

46.8

Minor BPS

44.8

-0.5

2.2

56.68

Associated Gene:

Gene:

KLHL5

Ensembl Gene ID:

ENSAPLG00000007450

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039156

40472888 - 40525135

52248

ENSAPLT00000007758

40489075 - 40525135

36061