Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40517892_40518186_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40517892 - 40518186

Intron Length:

295

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTAGC

5'SS Class:

major

3'SS Sequence:

TTTGTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTTTCTCCAGCT

Flanking Amino Acid:

PPMSTHRHGLGVAVLEGPMY

Intron Amino Acid Position:

507

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

70.6

39.7

Major BPS

0.65

1.5

85.7

34.9

Major PPT

90.6

0.91

0.7

88.7

28.3

Minor 5ss

42.3

-0.8

2.5

51.2

40.6

Minor BPS

51.6

0.13

2.1

81.17

40.4

Associated Gene:

Gene:

KLHL5

Ensembl Gene ID:

ENSAPLG00000007450

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039156

40472888 - 40525135

52248

ENSAPLT00000007758

40489075 - 40525135

36061