About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40529810_40530721_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
40529810 - 40530721

Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTAGGTACT

5'SS Class:
major

3'SS Sequence:
TATTTTTCTTCAG|T

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TCTACTTTATTT

Flanking Amino Acid:
GQKINEITLPGNCVTLDWDK

Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.5
0.67
1.1
75.3
40.8

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
90.6
0.91
0.7
89.2
27.2

Minor 5ss
36.5
-1.5
3
43.6
43.6

Minor BPS
61.3
0.43
1.6
76.03
41.4

Associated Gene:

Gene:
WDR19

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

40528001 - 40560708
32708

40528001 - 40560708
32708