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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40530848_40532986_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40530848 - 40532986
Intron Length:
2139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
NKTSQLDSGMRDAMSFLLWS
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
83.1
0.74
0.8
82.4
34
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
WDR19
Ensembl Gene ID:
ENSAPLG00000010193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045365
40528001 - 40560708
32708
ENSAPLT00000010656
40528001 - 40560708
32708