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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40536793_40538042_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40536793 - 40538042
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
AATTTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
AATTTTTTAACA
Flanking Amino Acid:
QSYGSIVTYRWYGDGYIMIG
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
78.3
0.64
1
74.1
39.5
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
76.8
0.84
1
78.45
31.2

Associated Gene:

Gene:
WDR19
Ensembl Gene ID:
ENSAPLG00000010193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045365
40528001 - 40560708
32708
ENSAPLT00000010656
40528001 - 40560708
32708