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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40539607_40539696_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
40539607 - 40539696
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTATGCTAG
5'SS Class:
weak_major
3'SS Sequence:
CTTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
EVTIANHVEGELPVTVSVEV
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.1
52.2
41.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
92.5
0.96
0.6
87.6
22.8
Minor 5ss
52
0.07
2.4
60
45.8
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
WDR19
Ensembl Gene ID:
ENSAPLG00000010193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045365
40528001 - 40560708
32708
ENSAPLT00000010656
40528001 - 40560708
32708