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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40543651_40544264_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40543651 - 40544264
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TGTCTTTTTACA
Flanking Amino Acid:
GMVMSLEQIKGIEDHNLLAG
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
71.3
0.53
1
61.3
37
Major PPT
88.7
0.87
0.7
83.5
31.6
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
57.6
0.23
1.6
68.96
36.8

Associated Gene:

Gene:
WDR19
Ensembl Gene ID:
ENSAPLG00000010193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045365
40528001 - 40560708
32708
ENSAPLT00000010656
40528001 - 40560708
32708