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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40545968_40546866_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40545968 - 40546866
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
YEKGITKDNKYQEHDEACLA
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
77.3
37.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
72.2
0.5
1
66.7
44.2
Minor 5ss
36.9
-1.5
2.9
51.8
44.6
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
WDR19
Ensembl Gene ID:
ENSAPLG00000010193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045365
40528001 - 40560708
32708
ENSAPLT00000010656
40528001 - 40560708
32708