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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40547204_40548174_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40547204 - 40548174
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTACA
5'SS Class:
major
3'SS Sequence:
CTTGTCTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTTCTTAAAT
Flanking Amino Acid:
AASVYIRCKNWAKVGELLSY
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.5
37
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73.8
0.54
0.9
66.5
39.8
Minor 5ss
35.1
-1.7
2.8
40.3
40.4
Minor BPS
79.7
1.01
1.2
90.42
32.6

Associated Gene:

Gene:
WDR19
Ensembl Gene ID:
ENSAPLG00000010193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045365
40528001 - 40560708
32708
ENSAPLT00000010656
40528001 - 40560708
32708