About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40549477_40549690_F


Intron Information:

Intron Rank:
24

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
40549477 - 40549690

Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAATAATA

5'SS Class:
strong_major

3'SS Sequence:
TTGTTTTGACTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACTTAA

U12 Branch Point Sequence:
TGTTACTTAACT

Flanking Amino Acid:
QSLDGAKMVARFFLKLGDYG

Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.8
0.8
0.9
82.7
29.3

Major BPS
74.4
0.61
0.9
63.9
34.9

Major PPT
70.8
0.47
1
66.9
43.8

Minor 5ss
37.1
-1.5
3
49.4
46.4

Minor BPS
82.2
1.09
1.3
94.33
32.4

Associated Gene:

Gene:
WDR19

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

40528001 - 40560708
32708

40528001 - 40560708
32708