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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40551292_40551950_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40551292 - 40551950
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTCAGTACT
5'SS Class:
major
3'SS Sequence:
TATTTCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCAGTTTTAACT
Flanking Amino Acid:
FFLLCGQYARALKHFIKSPN
Intron Amino Acid Position:
1049

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
75.3
40.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.2
0.66
0.8
71.4
39.1
Minor 5ss
33.3
-1.9
2.6
36.6
39.8
Minor BPS
66.3
0.59
1.4
75.56
41.8

Associated Gene:

Gene:
WDR19
Ensembl Gene ID:
ENSAPLG00000010193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010656
40528001 - 40560708
32708