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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40563478_40564369_F

Intron Information:

Intron Rank:
132387
Intron Class:
major
Intron Phase:
Intron Coordinates:
40563478 - 40564369
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CGTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GTCTGACTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.3
0.75
0.9
80.3
37.3
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
46.9
-0.1
2.3
70.75
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021131
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038368
40562771 - 40564554
1784