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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40565438_40565637_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40565438 - 40565637
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTTAG
5'SS Class:
major
3'SS Sequence:
ATTCTGTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACACTTGAATT
Flanking Amino Acid:
DSVESDAMIKQKKAKSSKLP
Intron Amino Acid Position:
1115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71
37.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.9
0.65
0.8
73.6
36.3
Minor 5ss
39.6
-1.2
2.8
48.7
47.5
Minor BPS
58.2
0.34
1.5
70.65
40.5

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580
ENSAPLT00000034003
40564906 - 40582809
17904