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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40566651_40567094_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
40566651 - 40567094
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTACTG
5'SS Class:
major
3'SS Sequence:
CAATTTGACCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTCTTTCAATT
Flanking Amino Acid:
VQELAMHMSLRTQMCKRTVN
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
59.2
45.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
51.2
0.03
1.2
49
42.8
Minor 5ss
34.3
-1.8
3.4
47.5
47.9
Minor BPS
57.6
0.32
1.5
72.72
39

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034003
40564906 - 40582809
17904
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580