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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40567241_40568199_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40567241 - 40568199
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
CACATATTACAT
Flanking Amino Acid:
KQNWNLLPTQAIYSSVLPGE
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
73.9
0.59
1
81
30.2
Major PPT
93.7
0.98
0.6
88.2
29.1
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
41.4
-0.5
1.8
51.64
42.5

Associated Gene:

Gene:
RFC1
Ensembl Gene ID:
ENSAPLG00000010594
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023981
40565225 - 40604804
39580
ENSAPLT00000011129
40565225 - 40604804
39580
ENSAPLT00000034003
40564906 - 40582809
17904